CDS
Accession Number | TCMCG065C18477 |
gbkey | CDS |
Protein Id | XP_004969406.1 |
Location | complement(join(31915116..31915372,31915532..31915664,31915744..31916262,31917130..31917363,31917530..31917809,31917881..31919667,31921038..31921103,31921176..31921301,31921381..31921779,31921858..31922039,31922167..31922303,31923173..31923678,31923943..31924425,31924840..31925101,31925184..31925324,31925422..31925608,31926224..31926554,31926626..31926854,31926954..31927146,31927239..31927591,31927685..31927759,31927874..31928078,31928173..31928373,31928768..31928953,31929311..31929417,31929613..31929686,31929765..31929843,31930153..31930197,31931050..31931207,31933033..31933155,31933236..31933304)) |
Gene | LOC101760166 |
GeneID | 101760166 |
Organism | Setaria italica |
Protein
Length | 2708aa |
Molecule type | protein |
Topology | linear |
Data_file_division | PLN |
dblink | BioProject:PRJNA207554 |
db_source | XM_004969349.3 |
Definition | small subunit processome component 20 homolog [Setaria italica] |
EGGNOG-MAPPER Annotation
COG_category | V |
Description | Down-regulated in metastasis |
KEGG_TC | - |
KEGG_Module | - |
KEGG_Reaction | - |
KEGG_rclass | - |
BRITE |
ko00000
[VIEW IN KEGG] ko03009 [VIEW IN KEGG] |
KEGG_ko |
ko:K14772
[VIEW IN KEGG] |
EC | - |
KEGG_Pathway | - |
GOs | - |
Sequence
CDS: ATGGCGACCCCGTCGCACGCGGCGGTGAAGTGCCTCAACACGTGCGCGTCCAGCCGCAAGCGCTTCTCGTTCAAGACCTTCTCGCAGCGGGTGGAGGAGATCGACATCGATGTGTACCGCAGCCTACACGCTGTGAAGGCCGAGCCCTCCAGCGGCTCGTCCTTCTTCCTCGACGCCCTCATGGAGTGGAGGGAGCTTAATACTGCAGAGGATTTTATCTCATTTTATGAGGAGATGATACCATTGGTACAGACCCTACCTCAAATTGTATTGCACCGTGAAAAGCTCTTTTCTGCGCTTCTACTGAGAGTGAACATGAGTGCGAGATTGTCCCTGGAGCCGATACTCATGTTGATCACAGCTCTCTCCAGGGACATTCTAGAAGATTTTTTGCCCTTTCTAGGAAGACATGCTAATGGCATTTTAGCTCTCCTTAATGATGGTGGTGATCGTGATCCTGAAGTCCTGGAACAGGTCTTCACATCTTGGTCATATATAATGATGTACTTGCAAAAATATCTTGTGAAAGATATTGTCCAAATTCTAAGGATCACAGCAGCGTTGAGATACTTCCCAAAGGATTATGTTAGAGAATTTATGGCTGAATCAGTTTCATTTCTGCTGAGGAATGCACCTAATAATCAGCTAACACAAGGTTTAATGAAGTTTCTATTTGAGGCTGCTAAAAAATCATCACCTGTACGGATAGACGGGGTGATATCTTTGTTGTTGCATGTCATGAAAGGAACTTCTACAAAGCTCCACTCAAGAGCTGGGAAAGTCTTGAAGTTCTTGTTGAGCAAGTCAACTTTTACCACTATCCATGATAAATTCCCTACTGGGACTTCTACTATTCATGAGGTCATGACGGGGCTGATTCAAAGATTATGTGATGAAGTGGATCCAAAAGAATTGCCGTTGATATATACTTGTCTATTTGAAGAAATCAACGACTGCCTTAAGGATGGCTGTTTGGAGCATTTGAAGTGCTTGATTGATTTTCTTTCATTTGCTTTACATAAGAAACAAAGCAATGTGTTCGATAAGGTGAAGATAATTGAACTTGTTGAGTTGCTGGTTAGTAGATATGTGTTACCTGGTAACAACATAGTAGAAGCTGCTTCATCTGAGGTGCTGGGAAGTATTTTGGACTTTCTGCTGTGTGTTCTGGATGTTCCAATCATTTCTGGCAATTTATCAATCGTATCACCCTTTTATGTCCCAGTGTTTGAACTAACGAATCTGAGTGTGATTGTCTTTATAAAGAAACTTTTGGCAAAAGGTCCACAAATTACACAATATTTTGAAAGCCAGATATTGAGTGCAATGTGCAATTTTCTTTCAAGTTCACCGGAAGAAGTTCTCTTTATCCTTCTGAATTTCTTTAAAGGATCACAGAAGCAAATAATTCTTCATAGCACTGATGCAAACCATCTGGATTCAGTGGAGAAAGTGTGCAAGTTCTGTGAATCGAAATTCTCTTTCTGGATAGAATTCTTAGATGATACAGTCAACATTTCCAATCAATCTAGTAATCAGATCAGTGAAAAGGAAGCTGCTATACTGTGGGGATCTATTTGTTGCTATCCTTACATAAATGGTGTACGTCAAGATGGTTTGTCACTGTTGAAGAAGTTAATCTGCAACTTCGATCGGTTGCTTGAAGTGGGAGAAGAGAACGTGAATGGTCTTCCAATGACTACCTGGAGAGGTTTAATTGGTGCAGCATTGTCATCATACTGTGAACTTTTGCTGGTTAACACAAATATAAATTCAGAATTAAGTTTTTTCATATCGCTTGCCAAGAGTCACAGTACATGCCCACAAGTACTGTCTGCTGTAGCCGAGTATTTGGATTCCCTACAAGCGGTAGCATCCCTTGAAGTGACAAAAGAATTTGATCCACAAAATCTCTTGGATCTGTTCTCTATCTTTGCTGTCAACTTGAGCAGTCCAAACAAGGATGTCCGGATTTTAACATTGAGGATTCTATCATATTTTGTGAAAATGGACCAACGTCTAGGCACAAATGAAGAGAGACCACACAAGAGACAAAGAACAGAAGATTCTGGAGAGGAAACAGCTAAATACACTAATGTTTTGGATACCCTTCTGAGTGTTGAGTCAACTCCAATTTCAGTATCTACTAGCAGGAAAATTGCTATCTTCATTTCTCGGATACAAATGAGTATATCTTCCAAGATGGTTCATGATGATTACATAACTTCTCTCTTACATGGTCTTATTGGCATATTATACAATAGATTTAGTGATCTGTGGCCACCAACGCTGGATTGTCTTGCTGTCCTTGTTAGAAAACACAAGGAGCTTGTGTGGAGTCAGTTTGTTCAGTTTGTTGCAATTCACCAATCAAAAGGTTTGACTGTGAAAAATCTGGAGAAGCTGGAAGCTGCAACCCAACCACAGTCTATTTTTGACTGCTTCAGCTTTTATCTTGCTACGGACTTTGATTGCACACCGGTTGAGACCATGGCTACCTTGTTGCTTCAATCCCTTCAAAGGATTCCTGATGTTGCTGAGTCCCGATCTCGACATCTTATACCACTATTTCTAAAATTTATGGGCTATGAATATGATGATGGCAGCATCTTTAGTGCTGATTCATATATGCCTGAAAAATGTAAAGGCAAACAATGGAAGGCGATTCTAAAAGAATGGTTGAACTTATTGAAGTTAATGCACAATGCACGGTCGTTATATCAGAGCAAGGTTCTCCAGGAAGTACTAACTACAAGGGTTCTTGATGACAGTGATCCTGACATACAAGCAAAAGCACTGGATTGCCTATTGAACTGGAAGGATGAATTCTTGACCCCATATAGTCAAAACATTAAAAATCTGATTGACATTAAAACTCTTCGTGAAGAGATGACCACATGGGCAGTTTCACATGACTCCTTGTCAATTCTGAAAGATCATAGAAGTCGTGTTGTTCCTCTGGTTATCCGTGTGTTGACACCGAAAGTAAGGAAGTTGAAGCTACTTGGTTCTCGCAAGCACGCAGGTGTCAGTCATCGAAAGGCAATTCTTCGTTTCCTTTTGCAGTTTGATTCAAATGAACTTCAGCTCTTTTTCTCGTTACTTCTGAAGTCCTTGATCCCTGGCAGCCTCCAGCTTAAAATATTTGGTTCTCAGTCTGACAACCCACTTGGAAATGTCTCTGACATTATTGGAACTTCAACAGAAATTTGTATAGAGAACTTTACATGGAAAAAGGCAAATGGTTTTCTTCATTTGGTCGAAGAAATTTTTGGTACTTTTGATATGGCACACATAAGTCCATTCCTTAATGTTTTATTAATCATTGTTGCTCGTTTGCTGGAGAGTTGCATGCGGAATATCAGAAGTGCTAGTGATGGGAAATATGGTTGCAATCAATCAAATGACCATGATGATGGCGGCCTGGCAAATGTTGAAGTGGGTAATTCTGCAAATATGAATGAATGCCCTAAAGAAATCCATGGAGCAGACCATACAGAGGCAAGTGTGTCGATCAAGCAGTTGAAGCAGTTGGAGTTGAAGCAGTTGAAGGAGTTGAAGCAGTTGAAGGATCTGAGGTCTTTGTGTATTAAAATTGTCTTCTCAGCACTTAGTCACTATGAAAGTCATGACTTTGGAGAAAACTTCTGGAATATTTTTTTCTCTTCAGTGAAACCTCTGGTTGACTGCTTCACACAAGAAGCTTCAAGTAGTGAGAAGCCAAGTTCATTATTTGCTTGCTTCATGGCTATGAGTCGGAGCCCAACATTAGCACCACTACTGGAGTCAAATAATCTTGTACCAGCTATTTTTTCTATTTTAACTGTGAAGACAGCTTCGGGATCCATCACCTCTTATGCACTTGAGTTCATTGAGAATCTATTGAGGTTGGATATTGATTTGGAGCAGCAAGATGACAATTCAGTGAAGAAAATTCTTGTTCCACATATGGATGTTCTTATCCATAGTCTCCATGATTTTGTTAATCATCGCAAAGAGCTTAACAGGAAATCTGGTACATGGCTTGGGCAACGTGAACTTAGATTGTTCAAATTATTGCTAAATTACATCACAGACCCCTCAGCTGCAGAGAATTTCATAGACCTCATTCTTCCTTTTTTCAGTAAGAAGGATTTGAACTCTGATGAGTGTTTGGAAGCACTACGTGTTGTGAGGGGAATAGTTCCAAATCTAAAATGCAAGGTACCTGCAAAAGTTCTAAATGCACTGAACCCATTACTTGCGACTGTTGGATTGGAACAGCGGCTATGCATCTGTGATATTTATGATGGGCTGTCATTGCATGAATCTTCAATGTCATTTATGGCTGGGTTAATACGAGATCTGAATGCAGTTTCGACATCAGAACTTGGTGAACTAGATTATGACACAAGACTTAATGCCTATGACAAGGTTAACCCACAGTTGTTTCTTGGCCTGACAGAAGAGCATGTGGGCGCCATACTATCTCATTGCGTGTATGATATGTCATCTGAAGAGTTGATTTTTCGTCAAAGTGCATCCAGGGCCCTGCAAGCTTTTCTGGATTTTTCTGCCTCAGTTATGAATAATGATGAGTCCAAGTACTCTATTGAAACTGCTGATGTATCTGGAGAGAACAACACCAGAAACATTTGCACAAGGAACTGTATTCAGAAGATACTAGAAAAAACTTACCTGCACAATATGGGAGTAGCAATGGCTAAAGATGTATCAATTCAAAAGGAATGGATTATTTTACTTCGGGAGATGGTCTTCAATTTTAATCATTTAGCATCCTTAAGCTCATTTAGGCCTCTCTGTAAAGAGGATATGGAAGAGGATTTTTTCCACAACATAACTCATTTACAGGCAGGTAAAAGATCAAAAGCATTGTCACTTTTCAGACAGGGAATCAAGGAAAACAACTTTTCGGAGGATATCACTATGAAAGTGTTTGTTCCACTATTTTTCAATATGTTTTCTGACGTAAAAGCTGGGAAGGGTGAACAAGTCAGAGATGTATGTTTGGATACGCTATCTGCTGTCGCCGCCAATGTGCAATGGGAGCACTATAGAACAATATTGACGAGATGCTTCCGAGAATTGAGCCTTAAGCCTGATAAGCAGAAGGTCATATTGAGGTTGATTTGCTCAGTGTTAGACGCGTTCCACTTCATGAAGCCTGCAAAAGATGCCTTGGGAGATTCTGATGCAACAAGTGAAGATACTGATTCTTCAATTACATTCTCTTTAACTGCAGTCTCTTCTGATAAGCAAAACTACCTTCGAAAGGTAGTGTTTCCACAGGTTCAAAAGTTGTTGGGGGCAGATCCAGAGAGAGTTAATGTCAACATAAACCTGGTAGCACTGAAAATACTTAAGTTGCTACCTGTGGATTATTTTGAGGCACAACTTTCGAGCATCATTCATCGAATCTGTAACTTCCTCAAGAATCGTCTTGAAAGCATACGTGATGAAGCTAGGTCTGCTTTAGCTGCTTCTCTGAAGGAACTTGGGATTGGGTATTTGCAGTTTGTGGTCAAGATATTGAGAGCTATACTGAAAAGGGGCTTTGAGTTACATGTTCTGGGCTACACACTTCATTATTTGTTGTCAAAAAATATAACTGCTGATATGAATGGTAGGCTTGACTACTGTTTGGAAGATCTGTTGGCAGTTGTTCACAGTGATTTATTTGGAGATGTTGCTGAACAAAAGGAAGTTGAAAAGATTGCCTCCAAAATGAAAGAGACAAAGAAGAGAATGTCATTTGAGACTCTTAAGCTGATTGCTCAAAGTATTACATTTAGGCAACATTTGCTGAAGAAGCTAATCTCACCTGTTTCTTCACATCTTCAGAAGCAACTTACTCCGAAGTTGAAAACACGACTTGAGATGATGCTGCACAATATAGCCTTAGGGATTGAGTGCAATCCATCTACTGAAACATCAAACTTATTTACTGTTGTGTATTGGCTTATTAAGGATACTACTACAGGAAGTGAGTCTGAAAGCAAAGAGAATACACAATCCGGTCCTGGTCGAGGGAGTTCTGTAGGATTAAACTTCCCTGGCCTTGGTGAGAGTGGATCACAAAATTCTTATATACTTACCAAGTTTGCACTTGACTTGCTGCGTAATCGTCTGAAGAGCATCAAACTAGATAAGGAAGATGAGCAGCTCCTAAAGATGTTGGATCCCTTTGTAGACCTTTTGGGAGAATGTCTGAATTCCAAATATGAAAGTGTCCTCTCAGTTGCTTTTAGGTGTCTTGCCTTATTGGTGAAGCTTCCTTTGCCATCTCTCAGGGACAATGCAAATATTATAAAAAATGTGCTTATGGACATTGCACAGAGAGCTGGAAACTCCAATGGTCATTTAGTCACATCTTGTTTGAAGCTACTTGCTGATCTACTTAGAGGATTCAGGATTTCACTTTCAGATAATCAGCTCCAGATGCTTGTCCATACTCCTATGTTTGTTGATCTTCAGACAAATCCTTCCCCTGTTGCACTATCACTTCTGAAGGCAATAGTCAGGCGAAAGTTGGTTACCCATGAAATTTATGATATTGTAGTTAAGATAGGAGAGTTGATGGTAACAACGCTAACTGAATCTATACGGCAGCAATGCATTCAAATTCTGCTACAATTTTTTCTGAACTACCCACTTTCTGAGAAGCGCTTACAGCAACATATTGACTTTTTCTTGGCGAACTTAAGCTACGAGCATCCTTCAGGAAGAGAAGCTGTGCTTGAAATGCTCCATGACATTCTTACAAGATTTCCCCAGAGGATTATTGATGATCAGGGTCAAACTTTTTTTCTTCATCTTGTGGTTGCTTTAGCGAATGAACAGCATCAGAATGTGTCTTCAATGATCCTTAGAGCAATCAAAAAGCTGTTAGAACGCATTGGTGATCAGGGAAAGAGCTACATTTTTGAGTATTCGCTTTCATGGTACACTGGTGAAAAACAGAGTTTGTGGAGTGCTTCAGCTCAGGTCATTGGTTTACTTGTTGACGATCATACATTACGAACGGGCAAACACCTTAAAAGTATTCTGGCTGTTGCTAAAAAAATAATGGAATCATCTGCTGTTGCTTCTGGAATATTACGATCAGGCTTATCTGATGAAACTGTCCTGCCACTGTGGAAGGAGGCTTACCACTCTGTTGCCATGATGGAGAGGTTACTTCTTCGCTTTCCAGAGTTATATTTTGAGCAGAACATGGAGGAATTATGGATAATAGTATGCAAGTTGCTGATCCATCCTCATTCGATGTTGCGTATTATTTCAAGCTCTCTGGTAGCATCGTATTTTGCTACAGTTGAGAAGAGGAAACGTGAGCAGAAATCGGTTGCTACATCATGGTTGCTAGTTCAACCAAGCAGGCTATTCATAATCGCTGTTTCTTTCTTGAAACAACTGAGAACTGAACTTAGTGATACTACAGCAAATAATCTGATCGTACAGAATCTTGCATATTCGATCTGCAACCTGCATATGTCAATTAGGCAATCGACCTCGACACATCAGTTTTGGTCTAGCGTTAGTTCTCATCATGGTGCCTTCCTTGAGGGTTTTGAATTGCTTGGTTCAAGAAAAGTAAAGAACATGTTTCTTCTTTGTACTTCAACAACTACTGATGTATCTGTATCAAGCCTTGACAGTAGTGAAGAGCCTACATCTTTGTTAGTTTCTTCAATCCTAAAGAGGATGGGTAAAATTGCAATGCAGATGCAGGATACACAGACAAAGATCGTGTTCAATTGCTTCCGCATGATTTCATCAGCTCTTGGTTCTGAAGAATCACTAGCCTATGCTGATCACTTCTTGGCTCCATTGTATAAAGTTTCTGAAGGATTTTCTGGGAAAGTTGTTAGTGATGAAGTCAAGCAACTGGCTGAGGGGGTGCGGGACAAGTTACGTGATCTGATTGGTTCCGAGAAATTTGTTGAAGTCTACCAGAGTGTTAGGAAGGGCCTGAAATATAAGCGGGACAGTAGAAAGCAGGCGCAGAAGGTTATTGCAGCCGTGGACCCGGAGCGGCATGCCAAGCGAAAGCAGCGCATGGCAGCCAAGCACCGGGAGCATAAGAGGAGGAAGATAATGGCAATGAAGATGGGCAGGTGGATGAGGTAG |
Protein: MATPSHAAVKCLNTCASSRKRFSFKTFSQRVEEIDIDVYRSLHAVKAEPSSGSSFFLDALMEWRELNTAEDFISFYEEMIPLVQTLPQIVLHREKLFSALLLRVNMSARLSLEPILMLITALSRDILEDFLPFLGRHANGILALLNDGGDRDPEVLEQVFTSWSYIMMYLQKYLVKDIVQILRITAALRYFPKDYVREFMAESVSFLLRNAPNNQLTQGLMKFLFEAAKKSSPVRIDGVISLLLHVMKGTSTKLHSRAGKVLKFLLSKSTFTTIHDKFPTGTSTIHEVMTGLIQRLCDEVDPKELPLIYTCLFEEINDCLKDGCLEHLKCLIDFLSFALHKKQSNVFDKVKIIELVELLVSRYVLPGNNIVEAASSEVLGSILDFLLCVLDVPIISGNLSIVSPFYVPVFELTNLSVIVFIKKLLAKGPQITQYFESQILSAMCNFLSSSPEEVLFILLNFFKGSQKQIILHSTDANHLDSVEKVCKFCESKFSFWIEFLDDTVNISNQSSNQISEKEAAILWGSICCYPYINGVRQDGLSLLKKLICNFDRLLEVGEENVNGLPMTTWRGLIGAALSSYCELLLVNTNINSELSFFISLAKSHSTCPQVLSAVAEYLDSLQAVASLEVTKEFDPQNLLDLFSIFAVNLSSPNKDVRILTLRILSYFVKMDQRLGTNEERPHKRQRTEDSGEETAKYTNVLDTLLSVESTPISVSTSRKIAIFISRIQMSISSKMVHDDYITSLLHGLIGILYNRFSDLWPPTLDCLAVLVRKHKELVWSQFVQFVAIHQSKGLTVKNLEKLEAATQPQSIFDCFSFYLATDFDCTPVETMATLLLQSLQRIPDVAESRSRHLIPLFLKFMGYEYDDGSIFSADSYMPEKCKGKQWKAILKEWLNLLKLMHNARSLYQSKVLQEVLTTRVLDDSDPDIQAKALDCLLNWKDEFLTPYSQNIKNLIDIKTLREEMTTWAVSHDSLSILKDHRSRVVPLVIRVLTPKVRKLKLLGSRKHAGVSHRKAILRFLLQFDSNELQLFFSLLLKSLIPGSLQLKIFGSQSDNPLGNVSDIIGTSTEICIENFTWKKANGFLHLVEEIFGTFDMAHISPFLNVLLIIVARLLESCMRNIRSASDGKYGCNQSNDHDDGGLANVEVGNSANMNECPKEIHGADHTEASVSIKQLKQLELKQLKELKQLKDLRSLCIKIVFSALSHYESHDFGENFWNIFFSSVKPLVDCFTQEASSSEKPSSLFACFMAMSRSPTLAPLLESNNLVPAIFSILTVKTASGSITSYALEFIENLLRLDIDLEQQDDNSVKKILVPHMDVLIHSLHDFVNHRKELNRKSGTWLGQRELRLFKLLLNYITDPSAAENFIDLILPFFSKKDLNSDECLEALRVVRGIVPNLKCKVPAKVLNALNPLLATVGLEQRLCICDIYDGLSLHESSMSFMAGLIRDLNAVSTSELGELDYDTRLNAYDKVNPQLFLGLTEEHVGAILSHCVYDMSSEELIFRQSASRALQAFLDFSASVMNNDESKYSIETADVSGENNTRNICTRNCIQKILEKTYLHNMGVAMAKDVSIQKEWIILLREMVFNFNHLASLSSFRPLCKEDMEEDFFHNITHLQAGKRSKALSLFRQGIKENNFSEDITMKVFVPLFFNMFSDVKAGKGEQVRDVCLDTLSAVAANVQWEHYRTILTRCFRELSLKPDKQKVILRLICSVLDAFHFMKPAKDALGDSDATSEDTDSSITFSLTAVSSDKQNYLRKVVFPQVQKLLGADPERVNVNINLVALKILKLLPVDYFEAQLSSIIHRICNFLKNRLESIRDEARSALAASLKELGIGYLQFVVKILRAILKRGFELHVLGYTLHYLLSKNITADMNGRLDYCLEDLLAVVHSDLFGDVAEQKEVEKIASKMKETKKRMSFETLKLIAQSITFRQHLLKKLISPVSSHLQKQLTPKLKTRLEMMLHNIALGIECNPSTETSNLFTVVYWLIKDTTTGSESESKENTQSGPGRGSSVGLNFPGLGESGSQNSYILTKFALDLLRNRLKSIKLDKEDEQLLKMLDPFVDLLGECLNSKYESVLSVAFRCLALLVKLPLPSLRDNANIIKNVLMDIAQRAGNSNGHLVTSCLKLLADLLRGFRISLSDNQLQMLVHTPMFVDLQTNPSPVALSLLKAIVRRKLVTHEIYDIVVKIGELMVTTLTESIRQQCIQILLQFFLNYPLSEKRLQQHIDFFLANLSYEHPSGREAVLEMLHDILTRFPQRIIDDQGQTFFLHLVVALANEQHQNVSSMILRAIKKLLERIGDQGKSYIFEYSLSWYTGEKQSLWSASAQVIGLLVDDHTLRTGKHLKSILAVAKKIMESSAVASGILRSGLSDETVLPLWKEAYHSVAMMERLLLRFPELYFEQNMEELWIIVCKLLIHPHSMLRIISSSLVASYFATVEKRKREQKSVATSWLLVQPSRLFIIAVSFLKQLRTELSDTTANNLIVQNLAYSICNLHMSIRQSTSTHQFWSSVSSHHGAFLEGFELLGSRKVKNMFLLCTSTTTDVSVSSLDSSEEPTSLLVSSILKRMGKIAMQMQDTQTKIVFNCFRMISSALGSEESLAYADHFLAPLYKVSEGFSGKVVSDEVKQLAEGVRDKLRDLIGSEKFVEVYQSVRKGLKYKRDSRKQAQKVIAAVDPERHAKRKQRMAAKHREHKRRKIMAMKMGRWMR |