CDS

Accession Number TCMCG065C18477
gbkey CDS
Protein Id XP_004969406.1
Location complement(join(31915116..31915372,31915532..31915664,31915744..31916262,31917130..31917363,31917530..31917809,31917881..31919667,31921038..31921103,31921176..31921301,31921381..31921779,31921858..31922039,31922167..31922303,31923173..31923678,31923943..31924425,31924840..31925101,31925184..31925324,31925422..31925608,31926224..31926554,31926626..31926854,31926954..31927146,31927239..31927591,31927685..31927759,31927874..31928078,31928173..31928373,31928768..31928953,31929311..31929417,31929613..31929686,31929765..31929843,31930153..31930197,31931050..31931207,31933033..31933155,31933236..31933304))
Gene LOC101760166
GeneID 101760166
Organism Setaria italica

Protein

Length 2708aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_004969349.3
Definition small subunit processome component 20 homolog [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category V
Description Down-regulated in metastasis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCGACCCCGTCGCACGCGGCGGTGAAGTGCCTCAACACGTGCGCGTCCAGCCGCAAGCGCTTCTCGTTCAAGACCTTCTCGCAGCGGGTGGAGGAGATCGACATCGATGTGTACCGCAGCCTACACGCTGTGAAGGCCGAGCCCTCCAGCGGCTCGTCCTTCTTCCTCGACGCCCTCATGGAGTGGAGGGAGCTTAATACTGCAGAGGATTTTATCTCATTTTATGAGGAGATGATACCATTGGTACAGACCCTACCTCAAATTGTATTGCACCGTGAAAAGCTCTTTTCTGCGCTTCTACTGAGAGTGAACATGAGTGCGAGATTGTCCCTGGAGCCGATACTCATGTTGATCACAGCTCTCTCCAGGGACATTCTAGAAGATTTTTTGCCCTTTCTAGGAAGACATGCTAATGGCATTTTAGCTCTCCTTAATGATGGTGGTGATCGTGATCCTGAAGTCCTGGAACAGGTCTTCACATCTTGGTCATATATAATGATGTACTTGCAAAAATATCTTGTGAAAGATATTGTCCAAATTCTAAGGATCACAGCAGCGTTGAGATACTTCCCAAAGGATTATGTTAGAGAATTTATGGCTGAATCAGTTTCATTTCTGCTGAGGAATGCACCTAATAATCAGCTAACACAAGGTTTAATGAAGTTTCTATTTGAGGCTGCTAAAAAATCATCACCTGTACGGATAGACGGGGTGATATCTTTGTTGTTGCATGTCATGAAAGGAACTTCTACAAAGCTCCACTCAAGAGCTGGGAAAGTCTTGAAGTTCTTGTTGAGCAAGTCAACTTTTACCACTATCCATGATAAATTCCCTACTGGGACTTCTACTATTCATGAGGTCATGACGGGGCTGATTCAAAGATTATGTGATGAAGTGGATCCAAAAGAATTGCCGTTGATATATACTTGTCTATTTGAAGAAATCAACGACTGCCTTAAGGATGGCTGTTTGGAGCATTTGAAGTGCTTGATTGATTTTCTTTCATTTGCTTTACATAAGAAACAAAGCAATGTGTTCGATAAGGTGAAGATAATTGAACTTGTTGAGTTGCTGGTTAGTAGATATGTGTTACCTGGTAACAACATAGTAGAAGCTGCTTCATCTGAGGTGCTGGGAAGTATTTTGGACTTTCTGCTGTGTGTTCTGGATGTTCCAATCATTTCTGGCAATTTATCAATCGTATCACCCTTTTATGTCCCAGTGTTTGAACTAACGAATCTGAGTGTGATTGTCTTTATAAAGAAACTTTTGGCAAAAGGTCCACAAATTACACAATATTTTGAAAGCCAGATATTGAGTGCAATGTGCAATTTTCTTTCAAGTTCACCGGAAGAAGTTCTCTTTATCCTTCTGAATTTCTTTAAAGGATCACAGAAGCAAATAATTCTTCATAGCACTGATGCAAACCATCTGGATTCAGTGGAGAAAGTGTGCAAGTTCTGTGAATCGAAATTCTCTTTCTGGATAGAATTCTTAGATGATACAGTCAACATTTCCAATCAATCTAGTAATCAGATCAGTGAAAAGGAAGCTGCTATACTGTGGGGATCTATTTGTTGCTATCCTTACATAAATGGTGTACGTCAAGATGGTTTGTCACTGTTGAAGAAGTTAATCTGCAACTTCGATCGGTTGCTTGAAGTGGGAGAAGAGAACGTGAATGGTCTTCCAATGACTACCTGGAGAGGTTTAATTGGTGCAGCATTGTCATCATACTGTGAACTTTTGCTGGTTAACACAAATATAAATTCAGAATTAAGTTTTTTCATATCGCTTGCCAAGAGTCACAGTACATGCCCACAAGTACTGTCTGCTGTAGCCGAGTATTTGGATTCCCTACAAGCGGTAGCATCCCTTGAAGTGACAAAAGAATTTGATCCACAAAATCTCTTGGATCTGTTCTCTATCTTTGCTGTCAACTTGAGCAGTCCAAACAAGGATGTCCGGATTTTAACATTGAGGATTCTATCATATTTTGTGAAAATGGACCAACGTCTAGGCACAAATGAAGAGAGACCACACAAGAGACAAAGAACAGAAGATTCTGGAGAGGAAACAGCTAAATACACTAATGTTTTGGATACCCTTCTGAGTGTTGAGTCAACTCCAATTTCAGTATCTACTAGCAGGAAAATTGCTATCTTCATTTCTCGGATACAAATGAGTATATCTTCCAAGATGGTTCATGATGATTACATAACTTCTCTCTTACATGGTCTTATTGGCATATTATACAATAGATTTAGTGATCTGTGGCCACCAACGCTGGATTGTCTTGCTGTCCTTGTTAGAAAACACAAGGAGCTTGTGTGGAGTCAGTTTGTTCAGTTTGTTGCAATTCACCAATCAAAAGGTTTGACTGTGAAAAATCTGGAGAAGCTGGAAGCTGCAACCCAACCACAGTCTATTTTTGACTGCTTCAGCTTTTATCTTGCTACGGACTTTGATTGCACACCGGTTGAGACCATGGCTACCTTGTTGCTTCAATCCCTTCAAAGGATTCCTGATGTTGCTGAGTCCCGATCTCGACATCTTATACCACTATTTCTAAAATTTATGGGCTATGAATATGATGATGGCAGCATCTTTAGTGCTGATTCATATATGCCTGAAAAATGTAAAGGCAAACAATGGAAGGCGATTCTAAAAGAATGGTTGAACTTATTGAAGTTAATGCACAATGCACGGTCGTTATATCAGAGCAAGGTTCTCCAGGAAGTACTAACTACAAGGGTTCTTGATGACAGTGATCCTGACATACAAGCAAAAGCACTGGATTGCCTATTGAACTGGAAGGATGAATTCTTGACCCCATATAGTCAAAACATTAAAAATCTGATTGACATTAAAACTCTTCGTGAAGAGATGACCACATGGGCAGTTTCACATGACTCCTTGTCAATTCTGAAAGATCATAGAAGTCGTGTTGTTCCTCTGGTTATCCGTGTGTTGACACCGAAAGTAAGGAAGTTGAAGCTACTTGGTTCTCGCAAGCACGCAGGTGTCAGTCATCGAAAGGCAATTCTTCGTTTCCTTTTGCAGTTTGATTCAAATGAACTTCAGCTCTTTTTCTCGTTACTTCTGAAGTCCTTGATCCCTGGCAGCCTCCAGCTTAAAATATTTGGTTCTCAGTCTGACAACCCACTTGGAAATGTCTCTGACATTATTGGAACTTCAACAGAAATTTGTATAGAGAACTTTACATGGAAAAAGGCAAATGGTTTTCTTCATTTGGTCGAAGAAATTTTTGGTACTTTTGATATGGCACACATAAGTCCATTCCTTAATGTTTTATTAATCATTGTTGCTCGTTTGCTGGAGAGTTGCATGCGGAATATCAGAAGTGCTAGTGATGGGAAATATGGTTGCAATCAATCAAATGACCATGATGATGGCGGCCTGGCAAATGTTGAAGTGGGTAATTCTGCAAATATGAATGAATGCCCTAAAGAAATCCATGGAGCAGACCATACAGAGGCAAGTGTGTCGATCAAGCAGTTGAAGCAGTTGGAGTTGAAGCAGTTGAAGGAGTTGAAGCAGTTGAAGGATCTGAGGTCTTTGTGTATTAAAATTGTCTTCTCAGCACTTAGTCACTATGAAAGTCATGACTTTGGAGAAAACTTCTGGAATATTTTTTTCTCTTCAGTGAAACCTCTGGTTGACTGCTTCACACAAGAAGCTTCAAGTAGTGAGAAGCCAAGTTCATTATTTGCTTGCTTCATGGCTATGAGTCGGAGCCCAACATTAGCACCACTACTGGAGTCAAATAATCTTGTACCAGCTATTTTTTCTATTTTAACTGTGAAGACAGCTTCGGGATCCATCACCTCTTATGCACTTGAGTTCATTGAGAATCTATTGAGGTTGGATATTGATTTGGAGCAGCAAGATGACAATTCAGTGAAGAAAATTCTTGTTCCACATATGGATGTTCTTATCCATAGTCTCCATGATTTTGTTAATCATCGCAAAGAGCTTAACAGGAAATCTGGTACATGGCTTGGGCAACGTGAACTTAGATTGTTCAAATTATTGCTAAATTACATCACAGACCCCTCAGCTGCAGAGAATTTCATAGACCTCATTCTTCCTTTTTTCAGTAAGAAGGATTTGAACTCTGATGAGTGTTTGGAAGCACTACGTGTTGTGAGGGGAATAGTTCCAAATCTAAAATGCAAGGTACCTGCAAAAGTTCTAAATGCACTGAACCCATTACTTGCGACTGTTGGATTGGAACAGCGGCTATGCATCTGTGATATTTATGATGGGCTGTCATTGCATGAATCTTCAATGTCATTTATGGCTGGGTTAATACGAGATCTGAATGCAGTTTCGACATCAGAACTTGGTGAACTAGATTATGACACAAGACTTAATGCCTATGACAAGGTTAACCCACAGTTGTTTCTTGGCCTGACAGAAGAGCATGTGGGCGCCATACTATCTCATTGCGTGTATGATATGTCATCTGAAGAGTTGATTTTTCGTCAAAGTGCATCCAGGGCCCTGCAAGCTTTTCTGGATTTTTCTGCCTCAGTTATGAATAATGATGAGTCCAAGTACTCTATTGAAACTGCTGATGTATCTGGAGAGAACAACACCAGAAACATTTGCACAAGGAACTGTATTCAGAAGATACTAGAAAAAACTTACCTGCACAATATGGGAGTAGCAATGGCTAAAGATGTATCAATTCAAAAGGAATGGATTATTTTACTTCGGGAGATGGTCTTCAATTTTAATCATTTAGCATCCTTAAGCTCATTTAGGCCTCTCTGTAAAGAGGATATGGAAGAGGATTTTTTCCACAACATAACTCATTTACAGGCAGGTAAAAGATCAAAAGCATTGTCACTTTTCAGACAGGGAATCAAGGAAAACAACTTTTCGGAGGATATCACTATGAAAGTGTTTGTTCCACTATTTTTCAATATGTTTTCTGACGTAAAAGCTGGGAAGGGTGAACAAGTCAGAGATGTATGTTTGGATACGCTATCTGCTGTCGCCGCCAATGTGCAATGGGAGCACTATAGAACAATATTGACGAGATGCTTCCGAGAATTGAGCCTTAAGCCTGATAAGCAGAAGGTCATATTGAGGTTGATTTGCTCAGTGTTAGACGCGTTCCACTTCATGAAGCCTGCAAAAGATGCCTTGGGAGATTCTGATGCAACAAGTGAAGATACTGATTCTTCAATTACATTCTCTTTAACTGCAGTCTCTTCTGATAAGCAAAACTACCTTCGAAAGGTAGTGTTTCCACAGGTTCAAAAGTTGTTGGGGGCAGATCCAGAGAGAGTTAATGTCAACATAAACCTGGTAGCACTGAAAATACTTAAGTTGCTACCTGTGGATTATTTTGAGGCACAACTTTCGAGCATCATTCATCGAATCTGTAACTTCCTCAAGAATCGTCTTGAAAGCATACGTGATGAAGCTAGGTCTGCTTTAGCTGCTTCTCTGAAGGAACTTGGGATTGGGTATTTGCAGTTTGTGGTCAAGATATTGAGAGCTATACTGAAAAGGGGCTTTGAGTTACATGTTCTGGGCTACACACTTCATTATTTGTTGTCAAAAAATATAACTGCTGATATGAATGGTAGGCTTGACTACTGTTTGGAAGATCTGTTGGCAGTTGTTCACAGTGATTTATTTGGAGATGTTGCTGAACAAAAGGAAGTTGAAAAGATTGCCTCCAAAATGAAAGAGACAAAGAAGAGAATGTCATTTGAGACTCTTAAGCTGATTGCTCAAAGTATTACATTTAGGCAACATTTGCTGAAGAAGCTAATCTCACCTGTTTCTTCACATCTTCAGAAGCAACTTACTCCGAAGTTGAAAACACGACTTGAGATGATGCTGCACAATATAGCCTTAGGGATTGAGTGCAATCCATCTACTGAAACATCAAACTTATTTACTGTTGTGTATTGGCTTATTAAGGATACTACTACAGGAAGTGAGTCTGAAAGCAAAGAGAATACACAATCCGGTCCTGGTCGAGGGAGTTCTGTAGGATTAAACTTCCCTGGCCTTGGTGAGAGTGGATCACAAAATTCTTATATACTTACCAAGTTTGCACTTGACTTGCTGCGTAATCGTCTGAAGAGCATCAAACTAGATAAGGAAGATGAGCAGCTCCTAAAGATGTTGGATCCCTTTGTAGACCTTTTGGGAGAATGTCTGAATTCCAAATATGAAAGTGTCCTCTCAGTTGCTTTTAGGTGTCTTGCCTTATTGGTGAAGCTTCCTTTGCCATCTCTCAGGGACAATGCAAATATTATAAAAAATGTGCTTATGGACATTGCACAGAGAGCTGGAAACTCCAATGGTCATTTAGTCACATCTTGTTTGAAGCTACTTGCTGATCTACTTAGAGGATTCAGGATTTCACTTTCAGATAATCAGCTCCAGATGCTTGTCCATACTCCTATGTTTGTTGATCTTCAGACAAATCCTTCCCCTGTTGCACTATCACTTCTGAAGGCAATAGTCAGGCGAAAGTTGGTTACCCATGAAATTTATGATATTGTAGTTAAGATAGGAGAGTTGATGGTAACAACGCTAACTGAATCTATACGGCAGCAATGCATTCAAATTCTGCTACAATTTTTTCTGAACTACCCACTTTCTGAGAAGCGCTTACAGCAACATATTGACTTTTTCTTGGCGAACTTAAGCTACGAGCATCCTTCAGGAAGAGAAGCTGTGCTTGAAATGCTCCATGACATTCTTACAAGATTTCCCCAGAGGATTATTGATGATCAGGGTCAAACTTTTTTTCTTCATCTTGTGGTTGCTTTAGCGAATGAACAGCATCAGAATGTGTCTTCAATGATCCTTAGAGCAATCAAAAAGCTGTTAGAACGCATTGGTGATCAGGGAAAGAGCTACATTTTTGAGTATTCGCTTTCATGGTACACTGGTGAAAAACAGAGTTTGTGGAGTGCTTCAGCTCAGGTCATTGGTTTACTTGTTGACGATCATACATTACGAACGGGCAAACACCTTAAAAGTATTCTGGCTGTTGCTAAAAAAATAATGGAATCATCTGCTGTTGCTTCTGGAATATTACGATCAGGCTTATCTGATGAAACTGTCCTGCCACTGTGGAAGGAGGCTTACCACTCTGTTGCCATGATGGAGAGGTTACTTCTTCGCTTTCCAGAGTTATATTTTGAGCAGAACATGGAGGAATTATGGATAATAGTATGCAAGTTGCTGATCCATCCTCATTCGATGTTGCGTATTATTTCAAGCTCTCTGGTAGCATCGTATTTTGCTACAGTTGAGAAGAGGAAACGTGAGCAGAAATCGGTTGCTACATCATGGTTGCTAGTTCAACCAAGCAGGCTATTCATAATCGCTGTTTCTTTCTTGAAACAACTGAGAACTGAACTTAGTGATACTACAGCAAATAATCTGATCGTACAGAATCTTGCATATTCGATCTGCAACCTGCATATGTCAATTAGGCAATCGACCTCGACACATCAGTTTTGGTCTAGCGTTAGTTCTCATCATGGTGCCTTCCTTGAGGGTTTTGAATTGCTTGGTTCAAGAAAAGTAAAGAACATGTTTCTTCTTTGTACTTCAACAACTACTGATGTATCTGTATCAAGCCTTGACAGTAGTGAAGAGCCTACATCTTTGTTAGTTTCTTCAATCCTAAAGAGGATGGGTAAAATTGCAATGCAGATGCAGGATACACAGACAAAGATCGTGTTCAATTGCTTCCGCATGATTTCATCAGCTCTTGGTTCTGAAGAATCACTAGCCTATGCTGATCACTTCTTGGCTCCATTGTATAAAGTTTCTGAAGGATTTTCTGGGAAAGTTGTTAGTGATGAAGTCAAGCAACTGGCTGAGGGGGTGCGGGACAAGTTACGTGATCTGATTGGTTCCGAGAAATTTGTTGAAGTCTACCAGAGTGTTAGGAAGGGCCTGAAATATAAGCGGGACAGTAGAAAGCAGGCGCAGAAGGTTATTGCAGCCGTGGACCCGGAGCGGCATGCCAAGCGAAAGCAGCGCATGGCAGCCAAGCACCGGGAGCATAAGAGGAGGAAGATAATGGCAATGAAGATGGGCAGGTGGATGAGGTAG
Protein:  
MATPSHAAVKCLNTCASSRKRFSFKTFSQRVEEIDIDVYRSLHAVKAEPSSGSSFFLDALMEWRELNTAEDFISFYEEMIPLVQTLPQIVLHREKLFSALLLRVNMSARLSLEPILMLITALSRDILEDFLPFLGRHANGILALLNDGGDRDPEVLEQVFTSWSYIMMYLQKYLVKDIVQILRITAALRYFPKDYVREFMAESVSFLLRNAPNNQLTQGLMKFLFEAAKKSSPVRIDGVISLLLHVMKGTSTKLHSRAGKVLKFLLSKSTFTTIHDKFPTGTSTIHEVMTGLIQRLCDEVDPKELPLIYTCLFEEINDCLKDGCLEHLKCLIDFLSFALHKKQSNVFDKVKIIELVELLVSRYVLPGNNIVEAASSEVLGSILDFLLCVLDVPIISGNLSIVSPFYVPVFELTNLSVIVFIKKLLAKGPQITQYFESQILSAMCNFLSSSPEEVLFILLNFFKGSQKQIILHSTDANHLDSVEKVCKFCESKFSFWIEFLDDTVNISNQSSNQISEKEAAILWGSICCYPYINGVRQDGLSLLKKLICNFDRLLEVGEENVNGLPMTTWRGLIGAALSSYCELLLVNTNINSELSFFISLAKSHSTCPQVLSAVAEYLDSLQAVASLEVTKEFDPQNLLDLFSIFAVNLSSPNKDVRILTLRILSYFVKMDQRLGTNEERPHKRQRTEDSGEETAKYTNVLDTLLSVESTPISVSTSRKIAIFISRIQMSISSKMVHDDYITSLLHGLIGILYNRFSDLWPPTLDCLAVLVRKHKELVWSQFVQFVAIHQSKGLTVKNLEKLEAATQPQSIFDCFSFYLATDFDCTPVETMATLLLQSLQRIPDVAESRSRHLIPLFLKFMGYEYDDGSIFSADSYMPEKCKGKQWKAILKEWLNLLKLMHNARSLYQSKVLQEVLTTRVLDDSDPDIQAKALDCLLNWKDEFLTPYSQNIKNLIDIKTLREEMTTWAVSHDSLSILKDHRSRVVPLVIRVLTPKVRKLKLLGSRKHAGVSHRKAILRFLLQFDSNELQLFFSLLLKSLIPGSLQLKIFGSQSDNPLGNVSDIIGTSTEICIENFTWKKANGFLHLVEEIFGTFDMAHISPFLNVLLIIVARLLESCMRNIRSASDGKYGCNQSNDHDDGGLANVEVGNSANMNECPKEIHGADHTEASVSIKQLKQLELKQLKELKQLKDLRSLCIKIVFSALSHYESHDFGENFWNIFFSSVKPLVDCFTQEASSSEKPSSLFACFMAMSRSPTLAPLLESNNLVPAIFSILTVKTASGSITSYALEFIENLLRLDIDLEQQDDNSVKKILVPHMDVLIHSLHDFVNHRKELNRKSGTWLGQRELRLFKLLLNYITDPSAAENFIDLILPFFSKKDLNSDECLEALRVVRGIVPNLKCKVPAKVLNALNPLLATVGLEQRLCICDIYDGLSLHESSMSFMAGLIRDLNAVSTSELGELDYDTRLNAYDKVNPQLFLGLTEEHVGAILSHCVYDMSSEELIFRQSASRALQAFLDFSASVMNNDESKYSIETADVSGENNTRNICTRNCIQKILEKTYLHNMGVAMAKDVSIQKEWIILLREMVFNFNHLASLSSFRPLCKEDMEEDFFHNITHLQAGKRSKALSLFRQGIKENNFSEDITMKVFVPLFFNMFSDVKAGKGEQVRDVCLDTLSAVAANVQWEHYRTILTRCFRELSLKPDKQKVILRLICSVLDAFHFMKPAKDALGDSDATSEDTDSSITFSLTAVSSDKQNYLRKVVFPQVQKLLGADPERVNVNINLVALKILKLLPVDYFEAQLSSIIHRICNFLKNRLESIRDEARSALAASLKELGIGYLQFVVKILRAILKRGFELHVLGYTLHYLLSKNITADMNGRLDYCLEDLLAVVHSDLFGDVAEQKEVEKIASKMKETKKRMSFETLKLIAQSITFRQHLLKKLISPVSSHLQKQLTPKLKTRLEMMLHNIALGIECNPSTETSNLFTVVYWLIKDTTTGSESESKENTQSGPGRGSSVGLNFPGLGESGSQNSYILTKFALDLLRNRLKSIKLDKEDEQLLKMLDPFVDLLGECLNSKYESVLSVAFRCLALLVKLPLPSLRDNANIIKNVLMDIAQRAGNSNGHLVTSCLKLLADLLRGFRISLSDNQLQMLVHTPMFVDLQTNPSPVALSLLKAIVRRKLVTHEIYDIVVKIGELMVTTLTESIRQQCIQILLQFFLNYPLSEKRLQQHIDFFLANLSYEHPSGREAVLEMLHDILTRFPQRIIDDQGQTFFLHLVVALANEQHQNVSSMILRAIKKLLERIGDQGKSYIFEYSLSWYTGEKQSLWSASAQVIGLLVDDHTLRTGKHLKSILAVAKKIMESSAVASGILRSGLSDETVLPLWKEAYHSVAMMERLLLRFPELYFEQNMEELWIIVCKLLIHPHSMLRIISSSLVASYFATVEKRKREQKSVATSWLLVQPSRLFIIAVSFLKQLRTELSDTTANNLIVQNLAYSICNLHMSIRQSTSTHQFWSSVSSHHGAFLEGFELLGSRKVKNMFLLCTSTTTDVSVSSLDSSEEPTSLLVSSILKRMGKIAMQMQDTQTKIVFNCFRMISSALGSEESLAYADHFLAPLYKVSEGFSGKVVSDEVKQLAEGVRDKLRDLIGSEKFVEVYQSVRKGLKYKRDSRKQAQKVIAAVDPERHAKRKQRMAAKHREHKRRKIMAMKMGRWMR